bugGNU Octave - Bugs: bug #60687, octave control: Undefined symbols...

 
 

bug #60687: octave control: Undefined symbols for architecture x86_64

Submitter:  Marius Schamschula <mschamschula>
Submitted:  Fri 28 May 2021 04:59:11 PM UTC
   
 
Category:  Octave Package Severity:  3 - Normal
Priority:  5 - Normal Item Group:  None
Status:  None Assigned to:  None
Originator Name:  Marius Schamschula Open/Closed:  * Open
Release:  * 6.2.0 Operating System:  * Mac OS
Fixed Release:  None Planned Release:  None
* Mandatory Fields

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Fri 28 May 2021 08:48:37 PM UTC, comment #5: 

helloworld.cc built and works fine.

 Marius Schamschula <mschamschula>
Fri 28 May 2021 08:38:18 PM UTC, comment #4: 

The nan package uses the mex interface.

Can you try a basic oct file like examples/code/helloworld.cc: https://hg.savannah.gnu.org/hgweb/octave/file/97e12df28ee6/examples/code/helloworld.cc


#include <octave/oct.h>

DEFUN_DLD (helloworld, args, nargout,
           "Hello World Help String")
{
  octave_stdout << "Hello World has "
                << args.length () << " input arguments and "
                << nargout << " output arguments.\n";

  // Return empty matrices for any outputs
  octave_value_list retval (nargout);
  for (int i = 0; i < nargout; i++)
    retval(i) = octave_value (Matrix ());

  return retval;
}



>> mkoctfile helloworld.cc
>> [x, y, z] = helloworld (1, 2, 3, 4);
Hello World has 4 input arguments and 3 output arguments.


 Mike Miller <mtmiller>
Group Member
Fri 28 May 2021 08:37:22 PM UTC, comment #3: 

Note: the below information was for an Intel machine. Building on an M1 (arm64) Mac, I don't even get that far:

/opt/local/bin/gfortran-mp11 -c -fPIC -pipe -Os -m32 -m64 AB01MD.f AB01MD.o
gfortran-mp11: error: unrecognized command-line option '-m32'

Marius Schamschula <mschamschula>
Fri 28 May 2021 08:26:59 PM UTC, comment #2: 

Just checked a couple of other octave packages. Of those that compiled code: nan built and linked fine, but gsl had a similar error as control.

 Marius Schamschula <mschamschula>
Fri 28 May 2021 08:14:21 PM UTC, comment #1: 

These same like basic functions, I don't think this is specific to the control package, maybe update the summary if you can confirm that any trivial oct file shows similar problems.

There has been some work recently on the development branch related to library symbol visibility, and some of that is specific to macOS, but I haven't followed too closely, nor do I use macOS. Refer to the thread here: https://octave.discourse.group/t/visibility-of-symbols-in-octave-libraries/1146?u=mtmiller

 Mike Miller <mtmiller>
Group Member
Fri 28 May 2021 04:59:11 PM UTC, original submission:  

While upgrading my work MacBook Pro to Big Sur, I ran into the following error rebuilding the control package, using MacPorts.

:info:configure rm -rf sltmp slicot
:info:configure LFLAGS="-L/opt/local/lib/octave/6.2.0 -L/opt/local/lib  -L/opt/local/lib -lopenblas -L/opt/local//lib/gcc11 -lgfortran -lquadmath -lm" \
:info:configure     /usr/bin/arch -arch x86_64 /opt/local/bin/mkoctfile-6.2.0 --verbose -Wall -Wno-deprecated-declarations  _control_slicot_functions_.cc common.cc slicotlibrary.a
:info:configure warning: LFLAGS is deprecated and will be removed in a future version of Octave, use LDFLAGS instead
:info:configure /usr/bin/clang++ -c -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -fPIC -I/opt/local/include/octave-6.2.0/octave/.. -I/opt/local/include/octave-6.2.0/octave -I/opt/local/include  -D_THREAD_SAFE -pthread -pipe -Os -std=c++11 -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -arch x86_64  -Wall -Wno-deprecated-declarations   _control_slicot_functions_.cc -o /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_math_octave-control/octave-control/work/.tmp/oct-eB8otE.o
:info:configure /usr/bin/clang++ -c -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -fPIC -I/opt/local/include/octave-6.2.0/octave/.. -I/opt/local/include/octave-6.2.0/octave -I/opt/local/include  -D_THREAD_SAFE -pthread -pipe -Os -std=c++11 -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -arch x86_64  -Wall -Wno-deprecated-declarations   common.cc -o /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_math_octave-control/octave-control/work/.tmp/oct-QmRaYL.o
:info:configure /usr/bin/clang++ -I/opt/local/include/octave-6.2.0/octave/.. -I/opt/local/include/octave-6.2.0/octave -I/opt/local/include  -D_THREAD_SAFE -pthread -pipe -Os -std=c++11 -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -arch x86_64  -Wall -Wno-deprecated-declarations -o _control_slicot_functions_.oct  /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_math_octave-control/octave-control/work/.tmp/oct-eB8otE.o /opt/local/var/macports/build/_Users_marius_Development_MacPorts_ports_math_octave-control/octave-control/work/.tmp/oct-QmRaYL.o  slicotlibrary.a -bundle -bundle_loader /opt/local/bin/octave-6.2.0 -L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -arch x86_64  -L/opt/local/lib/octave/6.2.0 -L/opt/local/lib  -L/opt/local/lib -lopenblas -L/opt/local//lib/gcc11 -lgfortran -lquadmath -lm  -L/opt/local//lib -Wl,-headerpad_max_install_names -L/opt/local//libexec/qt5/lib -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX11.3.sdk -arch x86_64 -loctinterp -loctave
:info:configure ld: warning: dylib (/opt/local/lib/libopenblas.dylib) was built for newer macOS version (11.3) than being linked (11.0)
:info:configure ld: warning: dylib (/opt/local//lib/gcc11/libgfortran.dylib) was built for newer macOS version (11.3) than being linked (11.0)
:info:configure ld: warning: dylib (/opt/local//lib/gcc11/libquadmath.dylib) was built for newer macOS version (11.3) than being linked (11.0)
:info:configure Undefined symbols for architecture x86_64:
:info:configure   "check_version(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from:
:info:configure       G__sl_ab08nd_ in oct-eB8otE.o
:info:configure       G__sl_ab13dd_ in oct-eB8otE.o
:info:configure       G__sl_sb10hd_ in oct-eB8otE.o
:info:configure       G__sl_sb10ed_ in oct-eB8otE.o
:info:configure       G__sl_ab13bd_ in oct-eB8otE.o
:info:configure       G__sl_sb01bd_ in oct-eB8otE.o
:info:configure       G__sl_sb10fd_ in oct-eB8otE.o
:info:configure       ...
:info:configure   "octave_dld_function::create(octave_value_list (*)(octave_value_list const&, int), octave::dynamic_library const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from:
:info:configure       G__sl_ab08nd_ in oct-eB8otE.o
:info:configure       G__sl_ab13dd_ in oct-eB8otE.o
:info:configure       G__sl_sb10hd_ in oct-eB8otE.o
:info:configure       G__sl_sb10ed_ in oct-eB8otE.o
:info:configure       G__sl_ab13bd_ in oct-eB8otE.o
:info:configure       G__sl_sb01bd_ in oct-eB8otE.o
:info:configure       G__sl_sb10fd_ in oct-eB8otE.o
:info:configure       ...
:info:configure   "Array<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >::nil_rep()", referenced from:
:info:configure       Array<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >::Array() in oct-eB8otE.o
:info:configure   "Array<std::__1::complex<double> >::fill(std::__1::complex<double> const&)", referenced from:
:info:configure       Array<std::__1::complex<double> >::Array(dim_vector const&, std::__1::complex<double> const&) in oct-eB8otE.o
:info:configure   "Array<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >::resize_fill_value() const", referenced from:
:info:configure       vtable for Array<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > in oct-eB8otE.o
:info:configure   "Array<std::__1::complex<double> >::resize_fill_value() const", referenced from:
:info:configure       vtable for ComplexColumnVector in oct-eB8otE.o
:info:configure       vtable for MArray<std::__1::complex<double> > in oct-eB8otE.o
:info:configure       vtable for Array<std::__1::complex<double> > in oct-eB8otE.o
:info:configure ld: symbol(s) not found for architecture x86_64


Marius Schamschula <mschamschula>

 

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