bugGNU Octave - Bugs: bug #43908, Some OF packages won't install...

 
 

bug #43908: Some OF packages won't install with 64-bit indexing Octave

Submitted by:  Philip Nienhuis <philipnienhuis>
Submitted on:  Tue 30 Dec 2014 11:41:15 PM UTC  
 
Category: Configuration and Build SystemSeverity: 4 - Important
Priority: 5 - NormalItem Group: Build Failure
Status: PostponedAssigned to: None
Originator Name: Philip NienhuisOpen/Closed: Open
Release: devOperating System: Any

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Wed 30 Sep 2015 11:50:31 PM UTC, comment #17:

Pushed fixes for fl-core, nurbs, and netcdf:

http://hg.octave.org/mxe-octave/rev/85abb6c3ec8b
http://hg.octave.org/mxe-octave/rev/de0b5dfe77f6
http://hg.octave.org/mxe-octave/rev/1c72016826aa

That leaves image and odepkg still with issues

John Donoghue <lostbard>
Project Member
Wed 30 Sep 2015 05:30:49 PM UTC, comment #16:

Posted new bug for of-nurbs: https://savannah.gnu.org/bugs/index.php?46081

John Donoghue <lostbard>
Project Member
Sun 27 Sep 2015 06:35:58 PM UTC, comment #15:

Posted new bug for mxe.h (used by nan and stk)
https://savannah.gnu.org/bugs/?46062

John Donoghue <lostbard>
Project Member
Sun 27 Sep 2015 01:49:45 PM UTC, comment #14:

The problem with stk, and nan seems to be this: https://savannah.gnu.org/bugs/?func=detailitem&item_id=43318

int64_t not defined

John Donoghue <lostbard>
Project Member
Sun 27 Sep 2015 01:36:38 PM UTC, comment #13:

Created a new bug report for netcdf and attached a patch that seems to work, if anyone else wants to try it.

https://savannah.gnu.org/bugs/index.php?46060

John Donoghue <lostbard>
Project Member
Sun 27 Sep 2015 12:26:32 AM UTC, comment #12:

nan also fails for me - anyone else seen issues with it?

John Donoghue <lostbard>
Project Member
Sat 26 Sep 2015 09:11:26 AM UTC, comment #11:

@JohnD: see attachment

(file #34983)

Philip Nienhuis <philipnienhuis>
Project Member
Fri 25 Sep 2015 12:58:25 PM UTC, comment #10:

Can you provide the log files for them?

I always do --enable-windows-64 which then enables --enable-64, so haven't tried --enable-64 on its own.

John Donoghue <lostbard>
Project Member
Fri 25 Sep 2015 11:51:39 AM UTC, comment #9:

Oopsie, should read: "...fail to get cross-compiled..."

I used 64-bit indexing ==> --enable-64

with --enable-windows-64 things (cross-)compile and run well.

As to "compile" (natively), I haven't tried as several packages (also the ones that do get (cross-)built need fixes in mxe (most if not all made by you) to get compiled anyway.

Philip Nienhuis <philipnienhuis>
Project Member
Fri 25 Sep 2015 10:28:54 AM UTC, comment #8:

@Phillip,

is that using --enable-windows-64, or just --enable-64 in configure for mxe-octave?

John Donoghue <lostbard>
Project Member
Thu 24 Sep 2015 06:33:40 PM UTC, comment #7:

Update:

In a recent 64-bit indexing build for Windows (4.1.0+, ~Sep 13) the following packages still fail to install (or get compiled when doing --enable-binary-packages in MXE):

image
fl-core
netcdf
nurbs
stk
odepkg

Philip Nienhuis <philipnienhuis>
Project Member
Sun 15 Mar 2015 02:16:42 AM UTC, comment #6:

The image package build failure is also previously reported as bug #38085.

Mike Miller <mtmiller>
Project Administrator
Mon 05 Jan 2015 09:42:14 PM UTC, comment #5:

I managed to get Octave w. 64-bit indexing built on Linux so I could try installing the OF packages in question.

Indeed, image-2.2.0, netcdf-1.0.5, fl-core-1.0.0 and odepkg-0.8.4 fail to build, all with invalid or ambiguous int conversions or -overloading.

I'll set status to "postponed". i.e. until the maintainers of those OF packages have managed to fix the 64-bit indexing build errors.

Philip Nienhuis <philipnienhuis>
Project Member
Wed 31 Dec 2014 07:49:46 PM UTC, comment #4:

I've yet to create a Linux build w.64-bit indexing; I have more priority for Windows builds as I use those at work.
JWE mentioned a native Linux MXE setup is required to also build the dependencies with 64-b idx.

Like you I also tend to think that the packages in question simply aren't fit for 64-bit indexing; a pity, esp. for the image package (I have some GIS raster maps and aerial photographs that easily expand to several GBs in RAM).

Philip Nienhuis <philipnienhuis>
Project Member
Wed 31 Dec 2014 07:05:59 PM UTC, comment #3:

I changed the title to reflect the fact that some packages still won't install when using 64-bit Octave.

Do they work when created and installed on a Linux system? My guess is that this doesn't have much to do with Windows or MXE cross-building, but that the Octave Forge coders didn't anticipate that there could be a 64-bit Octave.

Rik <rik5>
Project Administrator
Wed 31 Dec 2014 06:55:43 PM UTC, comment #2:

As to timing you've hit it on the nose :-) Just completed a 64-b indexing cross-build & tried it on Windows - my last Octave action in 2014 (2015 is just 4 hours away here).

I'm happy to report that your fix works fine. No includes required. Never expected that just deleting the module.mk entry would fix it.
- fuzzy-logic
- quaternion
- optim
did install fine. In addition
- ltfat
did install but with errors when generating the second shared library so I do not expect this package to work properly.

Some packages included in mxe-octave still do not install (but maybe that's due to the package code itself - just guessing):
- image
- odepkg
- fl-core
- netcdf

Close this bug, or change the title to reflect mxarray issue is solved but other packages still run into trouble, or update the 64-bit-indexing-on-Windows-entry in the task tracker?

Thank you for the fix.

Philip Nienhuis <philipnienhuis>
Project Member
Wed 31 Dec 2014 06:25:40 PM UTC, comment #1:

Has the situation improved since I committed a second fix for bug #43805 and we no longer distribute mxarray.h?

Or is the situation that we need to modify mxarray.in.h to have '#include <stdint.h>' in it?

Rik <rik5>
Project Administrator
Tue 30 Dec 2014 11:41:15 PM UTC, original submission:

Affected Octave-Forge packages are a.o., ltfat, fuzzy-logic, quaternion, optim.

See this thread on maintainers ML:
http://octave.1599824.n4.nabble.com/MXE-quot-undefined-reference-to-mxArray-mxArray-mxClassID-long-long-long-long-mxComplexity-quot-tt4667930.html#a4667953
That thread relates to a bug that turns out to be uncovered by the fix for bug #43805.

Philip Nienhuis <philipnienhuis>
Project Member

 

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file #34983:  64bidxofpkgerrs.tar.gz added by philipnienhuis (7KiB - application/x-gzip)

 

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  • -unavailable- added by philipnienhuis (Submitted the item)
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    Follow 11 latest changes.

    Date Changed By Updated Field Previous Value => Replaced By
    Fri 01 Jul 2016 05:24:38 PM UTCrik5Severity3 - Normal=>4 - Important
    Sun 27 Sep 2015 06:35:58 PM UTClostbardDependencies-=>Depends on bugs #46062
    Sun 27 Sep 2015 01:37:54 PM UTClostbardDependencies-=>Depends on bugs #46060
    Sat 26 Sep 2015 09:11:26 AM UTCphilipnienhuisAttached File-=>Added 64bidxofpkgerrs.tar.gz, #34983
    Fri 25 Sep 2015 06:54:34 PM UTCrik5Carbon-CopyRemoved 72865=>-
    Sun 15 Mar 2015 02:16:42 AM UTCmtmillerOperating SystemMicrosoft Windows=>Any
      Dependencies-=>Depends on bugs #38085
    Mon 05 Jan 2015 09:42:14 PM UTCphilipnienhuisStatusNeed Info=>Postponed
    Wed 31 Dec 2014 07:05:59 PM UTCrik5Operating SystemOther=>Microsoft Windows
      SummarySome OF packages won\'t build with 64-bit indexing Octave (mxarray.h issue)=>Some OF packages won't install with 64-bit indexing Octave
    Wed 31 Dec 2014 06:25:40 PM UTCrik5StatusNone=>Need Info

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