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Id: 11252
System Name: genezip
Name: genezip
Group Type: non-GNU software and documentation

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This project is a bioinformatics library for in-RAM compression of probabilistic genotypes. Increasing numbers of application need to store billions of floating precision values in RAM simultaneously for combinatorial statistics. Standard storage methods are not compatible with reasonable RAM restrictions on most computers.  This library adapts the DEFLATE algorithm to operate on probabilities with fixed precision, rather than ASCII characters. Pattern matching is implemented with a custom suffix tree algorithm with lazy updating for a sliding window search region. It provides OO access to stored probabilities suitable for bioinformatics applications. The project is implemented in C++ (with limited, wrapped traditional C).

Registration Date: Mon 23 Dec 2013 04:14:54 PM UTC
License: GNU General Public License v3 or later
Development Status: 4 - Beta

 

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