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GNU Health Hospital Management 4.4 released!

Item posted by Luis Falcon <meanmicio> on Sat 23 Dec 2023 11:28:57 PM UTC.

Dear community:

I am very happy to announce the release of the 4.4 series from the GNU Health Hospital Management Information System (HMIS) component!

What is new in GNUHealth Hospital Management 4.4 series

The following is a summary of the main new features included in GH 4.4 .

Improve ergonomics on patient health condition model
Menu for dental treatments
Include synchronization with Orthanc server using Tryton scheduler
Add age_str field to gnuhealth.patient.disease
Refactor FHIR server
Include surgery stock moves
New packages health_surgery_protocols and health_stock_surgery
Update documentation on existing modules
Expand information and management of surgical protocols
Support generate DICOM Modality Worklists
Operating room scheduler
QR Code bracelet / wristband in demographics. No need to enter the patient / clinical section to print the QR.
pot template generator
Support Stone Web Viewer and Osimis Web Viewer link.
Add service_updated to health_services* packages
Automatically create patient upon entering demographics
Move samples/interfaces/* to script directory
Add ICD-10 or ICD-11 parent to disease_categories
Update functionality in Health Genetics packages
Include ambulatory care reporting
Support no-patient labtest
Make age string returned by compute_age_from_dates function translatable.
Add code field to GnuHealthTestCritearea and let lab interface script use it
Write a example Interface with pandas.

Genomics and medical genetics package

A particular mention to the health_genetics packages because major work and significant improvements have been done for this version.
I've spent quite a bit of time on this to be ready for this new release. I am confident GNU Health genetics functionality can be a valuable tool for genomics and medical genetics, both in research and clinical practice.

The following is a summary of changes in health_genetics and health_genetics_uniprot packages:

Rename gnuhealth.disease.gene model to gnuhealth.gene
Rename disease_genes xml data files to human_genes
Update views and references in related modules
Include hgnc_id
The primary key is now the HGNC identifier
Add symbol aliases
Update gene type selection
Include locus group and type
Update Gene form and tree view
Include name aliases, omim, ensembl and refseq accession ids to gnuhealth.gene model
Gene related proteins are now managed in main health_genetics package
Update and remove obsolete references of natural variants and phenotypes
Use human genes datafiles for Genome Reference Consortium Human build 38 (grch38) and alternative loci
Include xrefs, protein and keywords in genetic diseases
Improve field descriptions
Simplify protein-related views and terms
Use Inheritance pattern
Include MIM reference in protein diseases tree view
Use xrefs in tree view to broaden search
Update protein diseases datafile
Update variants phenotypes datafile to v 2023_03_june28 from Uniprot

Upgrading from GNU Health 4.2

The GNUHealth 4.4 will benefit from the stability of using Tryton 6.0! Still, at GH level there are significant changes on the data dictionary and kernel.

As usual:

Make a FULL BACKUP your kernel, database and attach directories !!
Follow the instructions in the manual / Wikibooks

Development focus

In addition of the GH HMIS server, we will focus the development in the following areas of the GNU Health ecosystem:

The Documentation Portal: It's now a reality! Little by little we are integrating the information on https://docs.gnuhealth.org . We now have a dedicated server that will host the documentation for the GNUHealth ecosystem components. The docmentation portal is a read-only resource, focusing on stability and quality. Wikibooks will work as the great community wiki that has been helping us for over a decade. Wikibooks will also work for development discussion and host the latest screenshots at Wikimedia commons.

MyGNUHealth: The GNU Health Personal Health Record app for desktop and mobile devices is now at 2.0 and on Kivy framework! We can now port it to different platforms (Android, MacOS, ..) using pretty much the same codebase.

Thalamus and the Federation Portal. The GNU Health Federation integrates information from many health institutions and individuals from a region or country. The GH Federation portal will allow to manage resources, as well as the main point for *analytics* and *reporting* of massive demographics and epidemiological data generated nationwide. People, health centers and research institutions will benefit from the GNU Health Federation and the GNU Health ecosystem in general.

As always, no matter how hard we try to avoid them, there will be bugs, so please test the new system, upgrade process, languages, and give us your feedback via them via health@gnu.org

The community server has been already migrated to 4.4.0, so you just need to download the GNU Health HMIS client.

Happy and Healthy Hacking!
Luis