taskGNU Health - Tasks: task #13992, Expand person medical and clinical...


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task #13992: Expand person medical and clinical genetics information

Submitted by:  Luis Falcon <meanmicio>
Submitted on:  Sat 07 May 2016 09:45:17 PM UTC
Should Start On:  Sat 07 May 2016 12:00:00 AM UTC Should be Finished on:  Sat 07 Jan 2017 12:00:00 AM UTC
Category:  Data model Priority:  * 5 - Normal
Status:  Done Privacy:  Public
Percent Complete:  100% Assigned to:  meanmicio
Open/Closed:  Closed Release:  * 3.1.0
Module:  * health_genetics
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Sun 31 Jul 2016 08:53:39 PM UTC, comment #4: 

Include function field for gene, and allow search by gene in variant phenotypes.
Cleanup gene view.

Luis Falcon <meanmicio>
Project Administrator
Sat 09 Jul 2016 03:44:28 PM UTC, comment #3: 

Dear all
In the latest commit, I've updated the disease genes with UniProt info;  add models and views for gene natural variant, the resulting variant phenotypes,  and protein related diseases.

The person genetic related conditions will be linked to the gene variants phenotypic expression, and / or protein-related diseases from UniProt.

In addition to the gene code, the protein code is also used in both the disease gene model and the protein related diseases.

Also, I have added URL references to the Uniprot involved protein and its biological implication, as well as the MIM DB reference. This allows to get the latest updated information on the condition.

Luis Falcon <meanmicio>
Project Administrator
Thu 30 Jun 2016 11:27:57 AM UTC, comment #2: 

Added the model for gene sequence variant

Luis Falcon <meanmicio>
Project Administrator
Mon 27 Jun 2016 02:38:56 PM UTC, comment #1: 

Dear all

From 3.2 onwards, we'll use a new approach and design on "disease genes", to reflect the different phenotypic expressions resulting from variations on the same gene.

We'll also update the database to use the latest DB version from Uniprot.

When assigning a genetic condition to the patient, this will now be based on the combination of the gene and its particular variant.

The genetics module will have a much higher relevance with the upcoming GNU Health Federation, allowing a much closer interaction among physicians and research institutions.


Luis Falcon <meanmicio>
Project Administrator
Sat 07 May 2016 09:45:17 PM UTC, original submission:  

In addition to the family history and known genetic disorders on the individual, we'll include information such as genotyping, genetic markers, inherited vs acquired origins, and phenotypic expression.

Luis Falcon <meanmicio>
Project Administrator


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    Follow 12 latest changes.

    Date Changed by Updated Field Previous Value => Replaced by
    2016-11-29 meanmicio Open/ClosedOpen => Closed
    2016-11-29 meanmicio StatusIn Progress => Done
        Percent Complete70% => 100%
    2016-07-31 meanmicio Percent Complete60% => 70%
    2016-07-17 meanmicio StatusNone => In Progress
    2016-07-09 meanmicio Percent Complete30% => 60%
    2016-06-30 meanmicio Percent Complete10% => 30%
    2016-06-27 meanmicio Percent Complete0% => 10%
    2016-05-07 meanmicio Should be Finished on2016-05-07 => 2017-01-07
    2016-05-07 meanmicio CategoryNone => Data model
        Assigned toNone => meanmicio
        ReleaseNone => 3.1.0

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