bugGNU Octave - Bugs: bug #53624, [octave forge] (parallel)...

 
 

bug #53624: [octave forge] (parallel) parcellfun: unhandled error with octave in HPC cluster

Submitter:  None
Submitted:  Thu 12 Apr 2018 04:16:42 PM UTC
   
 
Category:  Octave Package Severity:  3 - Normal
Priority:  5 - Normal Item Group:  Installation Failure
Status:  Invalid / Not an Octave Bug Assigned to:  None
Originator Name:  Ivan Spisso Originator Email:  -email is unavailable-
Open/Closed:  * Closed Release:  * 4.2.2
Operating System:  * GNU/Linux Fixed Release:  None
Planned Release:  None
* Mandatory Fields

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Fri 13 Apr 2018 04:27:12 PM UTC, comment #3: 

Ok, then it doesn't look to me like there is a bug in the parallel package to me, it's configuring itself correctly based on your system configuration.

If you are looking for help or support on getting the parallel package working on your system, this is no the appropriate forum. Please try asking on the help mailing list:

https://www.octave.org/support.html
https://lists.gnu.org/mailman/listinfo/help-octave

Mike Miller <mtmiller>
Group Member
Fri 13 Apr 2018 09:03:41 AM UTC, comment #2: 

Dear Mike,
thanks for your prompt replay.
The GnuTLS library has NOT gnutls_srp_2048_group_prime in its headers.


[propro01@r000u06l01 src]$ locate gnutls_srp
[propro01@r000u06l01 src]$


Please, find attached the config.log for the parallel-3.1.1 package installed manually

Regards

Ivan


(file #43910)

Anonymous
Thu 12 Apr 2018 05:05:43 PM UTC, comment #1: 

The warning message seems pretty clear to me, do you have a GnuTLS library with gnutls_srp_2048_group_prime in its headers?

If you do and this check is failing, I think the config.log would be more helpful. Please download parallel-3.1.1.tar.gz manually, then


tar -xf parallel-3.1.1.tar.gz
cd parallel-3.1.1/src
./configure


Verify that the warning message is the same, and attach the config.log file.

Mike Miller <mtmiller>
Group Member
Thu 12 Apr 2018 04:16:42 PM UTC, original submission:  

Dear octave support,
I am trying to install octave v 4.2.2 + parallel-3.1.1 package to run octave in parallel.
Here there are the cluster details, Marconi A1, with Intel Brodwell processors (OS Centos 7.0) https://wiki.u-gov.it/confluence/display/SCAIUS/UG3.1%3A+MARCONI+UserGuide
I was able to install octave. To install the parallel-3.1.1 package and the struct-1.0.14, it was requested the libgnutls-dev
https://octave.sourceforge.io/parallel/package_doc/Installation.html
This is libgnutls available in the system,

[ispisso0@r000u07l02 ~]$ rpm -qa | grep gnutls
gnutls-dane-3.3.8-14.el7_2.x86_64
gnutls-3.3.8-14.el7_2.x86_64
gnutls-c++-3.3.8-14.el7_2.x86_64
gnutls-devel-3.3.8-14.el7_2.x86_64

When I try to install the package, we get the following Warning

checking for pkg-config... pkg-config
configure: WARNING: TLS disabled since symbol gnutls_srp_2048_group_prime not found in gnutls library - built with --disable-srp-authentication?


This Warning inhibits the correct use of the parallel package,
as reported here, https://octave.sourceforge.io/parallel/package_doc/Installation.html

After the installation, trying a very simple parallel test we get errors, see parcellfun.log

We have not found out an rpm package of the gnutls-dev in which the TLS-SRP is not disabled.
We have installed the  gnutls/3.6.2-gnu-6.1.0 from https://www.gnutls.org/download.html but it is not recognized during the build the gnutls library is not recognized because the -dev version are required.

Any hints or suggestion of how to overcome the issue?

Please find attached the building logs and the the parallel tests.

Thanks in advance

Ivan

Anonymous

 

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Attach Files:
   
   
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Attached Files
file #43910:  config.log added by None (51KiB - application/octet-stream)
file #43900:  pararrayfun.txt.txt added by None (2KiB - text/plain)
file #43901:  parallel_istall.log.txt added by None (21KiB - text/plain)

 

Depends on the following items: None found

Items that depend on this one: None found

 

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  • -email is unavailable- added by mtmiller (Updated the item)
  • -email is unavailable- added by None (Submitted the item)
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    Follow 8 latest changes.

    Date Changed by Updated Field Previous Value => Replaced by
    2018-04-13 mtmiller StatusNeed Info Invalid / Not an Octave Bug
        Open/ClosedOpen Closed
    2018-04-13 None Attached File- Added config.log, #43910
    2018-04-12 mtmiller Item GroupIncorrect Result Installation Failure
        StatusNone Need Info
    2018-04-12 mtmiller Summaryparcellfun: unhandled error with parallel-3-1.1 package octave in HPC cluster [octave forge] (parallel) parcellfun: unhandled error with octave in HPC cluster
    2018-04-12 None Attached File- Added pararrayfun.txt.txt, #43900
        Attached File- Added parallel_istall.log.txt, #43901

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